SupraBank - Binding of cyclic carboxylates to octa-acid deep-cavity cavitand

Description:: As part of the fourth statistical assessment of modeling of proteins and ligands (sampl.eyesopen.com) prediction challenge, the strength of association of nine guests (1–9) binding to octa-acid host was determined by a combination of 1H NMR and isothermal titration calorimetry. Association constants in sodium tetraborate buffered (pH 9.2) aqueous solution ranged from 5.39 × 102 M−1 in the case of benzoate 1, up to 3.82 × 105 M−1 for trans-4-methylcyclohexanoate 7. Overall, the free energy difference between the free energies of complexation of these weakest and strongest binding guests was ΔΔG° = 3.88 kcal mol−1. Based on a multitude of previous studies, the anticipated order of strength of binding was close to that which was actually obtained. However, the binding of guest 3 (4-ethylbenzoate) was considerably stronger than initially estimated.

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Citation:	C. L. D. Gibb, B. C. Gibb, SupraBank 2025, Binding of cyclic carboxylates to octa-acid deep-cavity cavitand (dataset). https://doi.org/10.34804/supra.20210928372
Link:	https://doi.org/10.34804/supra.20210928372
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Citation:	C. L. D. Gibb, B. C. Gibb, J Comput Aided Mol Des 2013, 28, 319–325.
Link:	https://doi.org/10.1007/s10822-013-9690-2
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